[pygr-notify] Issue 79 in pygr: Multi-sequence blast support

codesite-noreply at google.com codesite-noreply at google.com
Mon Mar 30 17:52:30 PDT 2009


Comment #1 on issue 79 by alexander.alekseyenko: Multi-sequence blast  
support
http://code.google.com/p/pygr/issues/detail?id=79

Debugging now. Having troubles frequent key errors:

Exception in thread Thread-1:
Traceback (most recent call last):
   File
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/threading.py",  
line
460, in __bootstrap
     self.run()
   File
"/Users/alexander/inc/pygr_test/pygr/build/lib.macosx-10.5-i386-2.5/pygr/blast.py",
line 56, in run
     for seqID, seq in self.seqDB.iteritems():
   File "seqdb.py", line 299, in iteritems
     yield seqID, self[seqID]
   File "seqdb.py", line 314, in __getitem__
     self._weakValueDict[seqID] = s # save in cache.
   File "classutil.py", line 392, in __setitem__
     self.keep_this(v)
   File "classutil.py", line 389, in keep_this
     del self._keepDict[vmin]

Is RecentValueDictionary thread safe?

--
You received this message because you are listed in the owner
or CC fields of this issue, or because you starred this issue.
You may adjust your issue notification preferences at:
http://code.google.com/hosting/settings



More information about the pygr-notify mailing list