March 2009 Archives by subject
Starting: Sun Mar 1 07:43:56 PST 2009
Ending: Tue Mar 31 19:59:35 PDT 2009
Messages: 174
- [pygr-notify] [pygr commit] r151 - wiki
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- [pygr-notify] [pygr commit] r152 - wiki
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- [pygr-notify] [pygr commit] r153 - wiki
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- [pygr-notify] [pygr commit] r154 - wiki
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- [pygr-notify] [pygr commit] r156 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r157 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r158 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r159 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r160 - Added () at the end of the 'nlmsa=...' line - they are needed if the new server is indeed ...
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- [pygr-notify] [pygr commit] r161 - Created wiki page through web user interface.
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- [pygr-notify] [pygr commit] r162 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r163 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r164 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r165 - Created wiki page through web user interface.
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- [pygr-notify] [pygr commit] r166 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r167 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r168 - Edited wiki page through web user interface.
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- [pygr-notify] [pygr commit] r169 - Edited wiki page through web user interface.
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- [pygr-notify] Issue 13 in pygr: support for gzipped file: NLMSABuilder, textfile_to_binaries, and dump_textfile
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- [pygr-notify] Issue 13 in pygr: support for gzipped file: NLMSABuilder, textfile_to_binaries, and dump_textfile
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- [pygr-notify] Issue 13 in pygr: support for gzipped file: NLMSABuilder, textfile_to_binaries, and dump_textfile
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- [pygr-notify] Issue 14 in pygr: pygr.Data.dir search improvement
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- [pygr-notify] Issue 14 in pygr: pygr.Data.dir search improvement
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- [pygr-notify] Issue 15 in pygr: patch: correctly identify user's MySQL config file on Windows
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- [pygr-notify] Issue 15 in pygr: patch: correctly identify user's MySQL config file on Windows
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- [pygr-notify] Issue 16 in pygr: Add pygr build files and .pygr_data to .gitignore
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- [pygr-notify] Issue 17 in pygr: create the MySQL test database if it does not exist, rather than skipping
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- [pygr-notify] Issue 18 in pygr: minor refactoring of protest.py
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- [pygr-notify] Issue 18 in pygr: minor refactoring of protest.py
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- [pygr-notify] Issue 19 in pygr: add pygrtest_common import to all primary tests
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- [pygr-notify] Issue 20 in pygr: refactor setup.py, add distutils & better import test
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- [pygr-notify] Issue 21 in pygr: pygr Pyrex compilation on Windows fails
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- [pygr-notify] Issue 21 in pygr: pygr Pyrex compilation on Windows fails
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- [pygr-notify] Issue 21 in pygr: pygr Pyrex compilation on Windows fails
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- [pygr-notify] Issue 22 in pygr: define informative __repr__ for BlastDBbase, BlastDB, and PrefixUnionDict; better KeyError report
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- [pygr-notify] Issue 22 in pygr: define informative __repr__ for BlastDBbase, BlastDB, and PrefixUnionDict; better KeyError report
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- [pygr-notify] Issue 22 in pygr: define informative __repr__ for BlastDBbase, BlastDB, and PrefixUnionDict; better KeyError report
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- [pygr-notify] Issue 23 in pygr: add status reporting of skip/errors while running unit tests with protest
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- [pygr-notify] Issue 24 in pygr: Add full readonly dict interface to BlastDBbase and PrefixUnionDict
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- [pygr-notify] Issue 25 in pygr: Unnecessary non-PEP-8 spacing in setup.py
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- [pygr-notify] Issue 27 in pygr: Patch for NLMSASlice cache hint memory leak; associated tests; refactoring of cache code.
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- [pygr-notify] Issue 27 in pygr: Patch for NLMSASlice cache hint memory leak; associated tests; refactoring of cache code.
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- [pygr-notify] Issue 28 in pygr: patch to test seq dicts passed into AnnotationDB.
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- [pygr-notify] Issue 28 in pygr: patch to test seq dicts passed into AnnotationDB.
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- [pygr-notify] Issue 29 in pygr: Add read-only dict behavior and associated tests to AnnotationDB.
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- [pygr-notify] Issue 30 in pygr: Add explicit equality test for independently generated annotation objects.
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- [pygr-notify] Issue 30 in pygr: Add explicit equality test for independently generated annotation objects.
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- [pygr-notify] Issue 31 in pygr: Fix bug in sqlgraph.SQLTable.generic_iterator; add associated tests
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- [pygr-notify] Issue 32 in pygr: Write a release procedure
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- [pygr-notify] Issue 34 in pygr: Refactor BLAST support as a mapping
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- [pygr-notify] Issue 34 in pygr: Refactor BLAST support as a mapping
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- [pygr-notify] Issue 34 in pygr: Refactor BLAST support as a mapping
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- [pygr-notify] Issue 34 in pygr: Refactor BLAST support as a mapping
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- [pygr-notify] Issue 36 in pygr: add SSL XMLRPC client and server support
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- [pygr-notify] Issue 36 in pygr: add SSL XMLRPC client and server support
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- [pygr-notify] Issue 37 in pygr: run XMLRPC server in a separate thread by default
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- [pygr-notify] Issue 37 in pygr: run XMLRPC server in a separate thread by default
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- [pygr-notify] Issue 37 in pygr: run XMLRPC server in a separate thread by default
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- [pygr-notify] Issue 4 in pygr: downloader.py, tarball has unnecessary path characters in uncompressed files
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- [pygr-notify] Issue 4 in pygr: downloader.py, tarball has unnecessary path characters in uncompressed files
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- [pygr-notify] Issue 4 in pygr: downloader.py, tarball has unnecessary path characters in uncompressed files
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- [pygr-notify] Issue 40 in pygr: add NLMSA convenience method for loading aligned intervals from any source
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- [pygr-notify] Issue 40 in pygr: add NLMSA convenience method for loading aligned intervals from any source
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- [pygr-notify] Issue 40 in pygr: add NLMSA convenience method for loading aligned intervals from any source
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- [pygr-notify] Issue 41 in pygr: TBLASTN parsing error
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- [pygr-notify] Issue 42 in pygr: KeyError for BLAST results that return no hits
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- [pygr-notify] Issue 43 in pygr: add a test for SQLSequence class method problem
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- [pygr-notify] Issue 44 in pygr: tblastn and blastx support
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- [pygr-notify] Issue 44 in pygr: tblastn and blastx support
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- [pygr-notify] Issue 45 in pygr: BlastDB has gotten slow due to cache
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- [pygr-notify] Issue 45 in pygr: BlastDB has gotten slow due to cache
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- [pygr-notify] Issue 46 in pygr: decorator syntax incompatible with Python 2.3
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- [pygr-notify] Issue 47 in pygr: KeyError on deleting pygr.Data resource
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- [pygr-notify] Issue 47 in pygr: KeyError on deleting pygr.Data resource
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- [pygr-notify] Issue 47 in pygr: KeyError on deleting pygr.Data resource
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- [pygr-notify] Issue 48 in pygr: megatest failure: cannot delete from dict
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- [pygr-notify] Issue 49 in pygr: Initial delay for membership checking in seqdb.BlastDB
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- [pygr-notify] Issue 49 in pygr: Initial delay for membership checking in seqdb.BlastDB
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- [pygr-notify] Issue 5 in pygr: to make a short download progress message in downloader.py
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- [pygr-notify] Issue 50 in pygr: SQL "view" mapping and graph transformations
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- [pygr-notify] Issue 50 in pygr: SQL "view" mapping and graph transformations
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- [pygr-notify] Issue 50 in pygr: SQL "view" mapping and graph transformations
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- [pygr-notify] Issue 53 in pygr: sqlgraph.GraphView ORDER-BY bug
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- [pygr-notify] Issue 53 in pygr: sqlgraph.GraphView ORDER-BY bug
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- [pygr-notify] Issue 54 in pygr: sqlgraph.GraphView unpickle-able error
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- [pygr-notify] Issue 54 in pygr: sqlgraph.GraphView unpickle-able error
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- [pygr-notify] Issue 54 in pygr: sqlgraph.GraphView unpickle-able error
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- [pygr-notify] Issue 54 in pygr: sqlgraph.GraphView unpickle-able error
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- [pygr-notify] Issue 57 in pygr: Consider simplifying SeqPath start, stop attribute handling
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- [pygr-notify] Issue 57 in pygr: Consider simplifying SeqPath start, stop attribute handling
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- [pygr-notify] Issue 58 in pygr: Refactor top-level pygr.Data namespace access
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- [pygr-notify] Issue 59 in pygr: Move annotation classes to a separate module
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- [pygr-notify] Issue 59 in pygr: Move annotation classes to a separate module
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- [pygr-notify] Issue 59 in pygr: Move annotation classes to a separate module
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- [pygr-notify] Issue 6 in pygr: incomplete dict method support for various pygr dict-like classes
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- [pygr-notify] Issue 6 in pygr: incomplete dict method support for various pygr dict-like classes
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- [pygr-notify] Issue 6 in pygr: incomplete dict method support for various pygr dict-like classes
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- [pygr-notify] Issue 65 in pygr: Code review: Istvan's test rewrite branch
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- [pygr-notify] Issue 65 in pygr: Code review: Istvan's test rewrite branch
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- [pygr-notify] Issue 65 in pygr: Code review: Istvan's test rewrite branch
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- [pygr-notify] Issue 66 in pygr: Code review: seqdb.py
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- [pygr-notify] Issue 67 in pygr: Test Istvan's new setup.py on multiple platforms
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- [pygr-notify] Issue 67 in pygr: Test Istvan's new setup.py on multiple platforms
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- [pygr-notify] Issue 67 in pygr: Test Istvan's new setup.py on multiple platforms
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- [pygr-notify] Issue 67 in pygr: Test Istvan's new setup.py on multiple platforms
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 69 in pygr: Make megatests more portable
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- [pygr-notify] Issue 7 in pygr: Analyze code coverage of tests, including megatests
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- [pygr-notify] Issue 7 in pygr: Analyze code coverage of tests, including megatests
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- [pygr-notify] Issue 7 in pygr: Analyze code coverage of tests, including megatests
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- [pygr-notify] Issue 7 in pygr: Analyze code coverage of tests, including megatests
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- [pygr-notify] Issue 7 in pygr: Analyze code coverage of tests, including megatests
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- [pygr-notify] Issue 70 in pygr: Support for sqlite
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- [pygr-notify] Issue 70 in pygr: Support for sqlite
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- [pygr-notify] Issue 70 in pygr: Support for sqlite
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- [pygr-notify] Issue 70 in pygr: Support for sqlite
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- [pygr-notify] Issue 71 in pygr: Support write operations to SQL databases
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- [pygr-notify] Issue 71 in pygr: Support write operations to SQL databases
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- [pygr-notify] Issue 71 in pygr: Support write operations to SQL databases
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- [pygr-notify] Issue 72 in pygr: Fix zombie dependence on pygr.poa
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- [pygr-notify] Issue 73 in pygr: Incorporate metabase branch
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- [pygr-notify] Issue 73 in pygr: Incorporate metabase branch
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- [pygr-notify] Issue 73 in pygr: Incorporate metabase branch
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- [pygr-notify] Issue 74 in pygr: undefined 'al' in NLMSA.add_aligned_intervals
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- [pygr-notify] Issue 74 in pygr: undefined 'al' in NLMSA.add_aligned_intervals
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- [pygr-notify] Issue 75 in pygr: Implement a remote-management interface for XML-RPC servers
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- [pygr-notify] Issue 75 in pygr: Implement a remote-management interface for XML-RPC servers
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- [pygr-notify] Issue 75 in pygr: Implement a remote-management interface for XML-RPC servers
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- [pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table
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- [pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table
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- [pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table
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- [pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table
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- [pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table
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- [pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table
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- [pygr-notify] Issue 76 in pygr: ensembl.SeqRegion gives KeyError if missing coord system
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- [pygr-notify] Issue 76 in pygr: ensembl.SeqRegion gives KeyError if missing coord system
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- [pygr-notify] Issue 76 in pygr: ensembl.SeqRegion gives KeyError if missing coord system or bad seqID
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- [pygr-notify] Issue 77 in pygr: Maintain a dependency tree of tests
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- [pygr-notify] Issue 77 in pygr: Maintain a dependency tree of tests
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- [pygr-notify] Issue 78 in pygr: Get rid of vague or imprecise error messages from tests
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- [pygr-notify] Issue 78 in pygr: Get rid of vague or imprecise error messages from tests
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- [pygr-notify] Issue 78 in pygr: Get rid of vague or imprecise error messages from tests
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 79 in pygr: Multi-sequence blast support
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- [pygr-notify] Issue 80 in pygr: pygr.downloader uses subprocess, which is not python2.3 compatible.
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- [pygr-notify] Issue 80 in pygr: pygr.downloader uses subprocess, which is not python2.3 compatible.
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- [pygr-notify] Issue 80 in pygr: pygr.downloader uses subprocess, which is not python2.3 compatible.
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- [pygr-notify] Issue 80 in pygr: pygr.downloader uses subprocess, which is not python2.3 compatible.
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- [pygr-notify] Issue 81 in pygr: Attribute error, ignored, in graph_test under python2.3
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- [pygr-notify] Issue 81 in pygr: Attribute error, ignored, in graph_test under python2.3
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- [pygr-notify] Issue 81 in pygr: Attribute error, ignored, in graph_test under python2.3
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- [pygr-notify] Issue 81 in pygr: Attribute error, ignored, in graph_test under python2.3
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- [pygr-notify] Issue 81 in pygr: Attribute error, ignored, in graph_test under python2.3
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- [pygr-notify] Issue 82 in pygr: Update setup.cfg
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- [pygr-notify] Issue 83 in pygr: Track running time of megatests
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- [pygr-notify] Issue 9 in pygr: Move old tests into tests/deprecated
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Last message date:
Tue Mar 31 19:59:35 PDT 2009
Archived on: Tue Mar 31 19:59:43 PDT 2009
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