[pygr-notify] [pygr commit] r110 - wiki

[codesite-noreply at google.com]

Author: cjlee112
Date: Fri Dec 12 10:57:56 2008
New Revision: 110

Modified:
    wiki/DevelopmentRoadmap.wiki

Log:
Edited wiki page through web user interface.

Modified: wiki/DevelopmentRoadmap.wiki
==============================================================================
--- wiki/DevelopmentRoadmap.wiki	(original)
+++ wiki/DevelopmentRoadmap.wiki	Fri Dec 12 10:57:56 2008
@@ -33,10 +33,12 @@
    * additional UCSC alignment format(s), e.g. supporting hg18/hg17 mapping  
- _done_

  API Clean-up:
-  * define an "alignment parser API" that makes it simple to add a parser  
for an arbitrary alignment format, and have the results automatically  
loaded into an NLMSA. - *not done*
-  * ensure that dict-like interfaces in Pygr properly support all the  
standard Mapping Protocol methods - *in progress*
+  * define an "alignment parser API" that makes it simple to add a parser  
for an arbitrary alignment format, and have the results automatically  
loaded into an NLMSA. - _done_
+  * ensure that dict-like interfaces in Pygr properly support all the  
standard Mapping Protocol methods - _done_
    * greatly expanded test suites courtesy of Rachel, Alex and Titus - *in  
progress*
-  * other clean-up and bug fixes - *in progress*
+  * other clean-up and bug fixes - _done_
+
+For details on current status, search the Issues database for label  
[http://code.google.com/p/pygr/issues/list?can=1&q=label%3AMilestone-Release0.8  
Milestone-Release0.8].

  == v0.9: NLMSA Joins ==
  In a  
[http://groups.google.com/group/pygr-dev/browse_thread/thread/0d4d02149022e5a6?hl=en  
number of discussions], we have already gone into some detail about new  
possible features for NLMSA.  The main idea is to define general purpose  
JOIN operations that execute in a high-speed, scalable way, obviating the  
need for researchers to write their own Python code (slow and possibly  
buggy) every time they need to find some intersection between two or more  
datasets.  The result of an NLMSA join will of course just be another  
NLMSA.  The goal is to make alignment and annotation query a killer app in  
terms of speed, query capabilities and ease of use.