[khmer] filter-below-abund.py fastq scores from previous file

[Jens-Konrad Preem]

OK. The filter-below-abund.py from sandbox did not produce an fastq file 
(from a fastq file foo.fastq.keep, it produced fasta file 
foo.fastq.keep.below),
The khmer was built at 19th of April with git clone 
git://github.com/ged-lab/khmer.git*, and make clean all. Havent checked 
filter abund yet.
Jens
*should clone the master branch? (Not much of git user)
On 04/19/2013 07:24 PM, C. Titus Brown wrote:
> On Fri, Apr 19, 2013 at 12:14:48PM +0300, Jens-Konrad Preem wrote:
>> On 04/17/2013 07:21 AM, C. Titus Brown wrote:
>>> I have hacked this into ged-lab/master branch for filter-abund and
>>> filter-below-abund.  Let me know if it works (or doesn't work!)
>>>
>>> cheers,
>>> --titus
>>>
>> So if I clone and build from the git page, those two scripts should now
>> put out fastq as their output?
> Yes.
>
>> Or do they need some extra tags at the start time?.
> Nope.
>
>> As a note - the sandbox scripts do not have the #!/usr/bin/env python
>> line  and also need to be chmod +x in addition to this to be started.
>> Don't know if it is so as some thought out design issue/feature or not,
>> anyway thought I'd mention it.
> Thanks for pointing this out!
>
> --t

-- 
Jens-Konrad Preem, MSc, University of Tartu