[khmer] filter-below-abund.py fastq scores from previous file

C. Titus Brown ctb at msu.edu
Fri Apr 19 09:24:19 PDT 2013


On Fri, Apr 19, 2013 at 12:14:48PM +0300, Jens-Konrad Preem wrote:
> On 04/17/2013 07:21 AM, C. Titus Brown wrote:
>> I have hacked this into ged-lab/master branch for filter-abund and
>> filter-below-abund.  Let me know if it works (or doesn't work!)
>>
>> cheers,
>> --titus
>>
> So if I clone and build from the git page, those two scripts should now  
> put out fastq as their output?

Yes.

> Or do they need some extra tags at the start time?.

Nope.

> As a note - the sandbox scripts do not have the #!/usr/bin/env python  
> line  and also need to be chmod +x in addition to this to be started.  
> Don't know if it is so as some thought out design issue/feature or not,  
> anyway thought I'd mention it.

Thanks for pointing this out!

--t
-- 
C. Titus Brown, ctb at msu.edu




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