[bip] Another brief pygr tutorial

[Brandon King]

Hey Titus,

Do you mind if I start posting the tutorials you have written, and have 
posted to mailing list, onto the wiki? (i.e. in creative commons / BSD 
licensed way?)

-Brandon

Titus Brown wrote:
> Folks,
>
> here's a discussion of how to use pygr to "decorate" sequence with
> annotations and then retrieve them by sequence position:
>
> http://iorich.caltech.edu/~t/bio+python/pygr/fast-retrieval-of-sequence-annotations.html
>
> http://iorich.caltech.edu/~t/bio+python/pygr/fast-retrieval-of-sequence-annotations.txt
>
> I'd be interested in your comments.  Clearly some more discussion is
> needed, but I thought I'd try to get this code out...
>
> I've now used this to analyze a ChIP-chip data set and I will post that
> as soon as I can suitably abstract the data (which is not mine & which
> is also unpublished ;).  I'm also planning to expand this with something
> showing how to save the annotations to disk, so that the long & slow
> part (building the indices) can be done only once.
>
> I will also post something brief showing how to load in the worm 5-way
> whole-genome alignment from UCSC.
>
> Is there anything that people are particularly interested in using pygr
> for?
>
> cheers,
> --titus
>
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