[bip] Sequence Manipulation

Titus Brown titus at caltech.edu
Tue Oct 30 10:00:16 PDT 2007


On Tue, Oct 30, 2007 at 02:18:35PM +0000, Nathan Harmston wrote:
-> Hi,
-> 
-> On the wiki one of the items in the cookbook is to:
-> 
-> "Module to perform sequence maniplations, ie. reverse complement,
-> DNA->RNA, RNA->protein, etc. "
-> 
-> So.....I m guessing a tutorial using BioPython might be useful
-> here.....maybe some links to the BioPython tutorials page need to be
-> added.

Please go ahead and add them -- it's a wiki!

-> Or.....
-> If this was to be written from scratch then I think that a bip
-> Sequence class would have to be defined....does anyone one have any
-> ideas on this and how it could/should be implemented.

Please, for the love of $DEITY, don't write something from scratch ;).

cheers,
--titus



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