[bip] Sequence Manipulation

[Giovanni Marco Dall'Olio]

2007/10/30, Nathan Harmston <iwanttobeabadger at googlemail.com>:
> Hi,
>
> On the wiki one of the items in the cookbook is to:
>
> "Module to perform sequence maniplations, ie. reverse complement,
> DNA->RNA, RNA->protein, etc. "

Hi... I didn't know there were a wiki for this mailing list.
Maybe you can configure the signature of the list to automatically add
a link to the wiki on the bottom of every message (don't ask how to do
it, please :) ).


> So.....I m guessing a tutorial using BioPython might be useful
> here.....maybe some links to the BioPython tutorials page need to be
> added.

Yes, there is a need of tutorial on biopython and python for biologist.
I would like to contribute with something but I'm not enougth
confident with my english yet to do it :(


> Or.....
> If this was to be written from scratch then I think that a bip
> Sequence class would have to be defined....does anyone one have any
> ideas on this and how it could/should be implemented.
>

I agree with the other message.. there is the BioPython Seq object
which is already available, maybe it would be better to use it instead
of writing another one.




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