[bip] welcome!

Bruce Southey bsouthey at gmail.com
Tue Jul 31 12:05:51 PDT 2007


Hi,
You have a nice set of examples. Although I did notice that your FASTA
section is incomplete because you must address the comment part of the
FASTA format (eg. see
http://en.wikipedia.org/wiki/Fasta_format ). Yeah, most programs and
people miss this but it is part of the format.

Bruce



On 7/31/07, Paulo Nuin <nuin at genedrift.org> wrote:
> Hi Everyone
>
> I just recently joined the list (tip from Andrew Dalke) and I work with
> Python to automate all my current motif search analysis. I have been
> using Python for a little bit more than a year now and I am learning a
> new aspect everyday. I do not have any large Python package to release
> to the public but most of my current coding is done in Python.
>
> I also have a blog with a Python tutorial for bioinformatics, which is
> based on the approach used by James Tisdall in his Beginning Perl for
> Bioinformatics.  The url is http://python.genedrift.org
>
> I also have been toying with wxPython, after years of using wxWidgets
> and planning to release my first interface based on it in the coming months.
>
> Cheers
>
> Paulo
>
> >
> >
> > Titus Brown wrote:
> >> hi folks,
> >>
> >> there are now 56 people subscribed to this list, so I thought I'd send
> >> out a semi-official "welcome!"
> >>
> >> I'm curious -- what does everyone do, and what do they use Python for?
> >>
> >> I personally do a lot of genome analysis and data integration, and I am
> >> most interested in parsers and interfaces to local command-line analysis
> >> programs.  My particular interest is in regulatory genomics and
> >> metagenomics, and I have written a few different packages (motif
> >> searching, BLAST parsing, etc.) that I'll post to the list as new
> >> versions come out.
> >>
> >> cheers,
> >> --titus
> >>
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> >>
> >>
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