[bip] welcome!

Paulo Nuin nuin at genedrift.org
Tue Jul 31 12:20:06 PDT 2007


Hi Bruce

Thanks for the tip. I will include a topic on that and change the class.

Cheers

Paulo

Bruce Southey wrote:
> Hi,
> You have a nice set of examples. Although I did notice that your FASTA
> section is incomplete because you must address the comment part of the
> FASTA format (eg. see
> http://en.wikipedia.org/wiki/Fasta_format ). Yeah, most programs and
> people miss this but it is part of the format.
>
> Bruce
>
>
>
> On 7/31/07, Paulo Nuin <nuin at genedrift.org> wrote:
>   
>> Hi Everyone
>>
>> I just recently joined the list (tip from Andrew Dalke) and I work with
>> Python to automate all my current motif search analysis. I have been
>> using Python for a little bit more than a year now and I am learning a
>> new aspect everyday. I do not have any large Python package to release
>> to the public but most of my current coding is done in Python.
>>
>> I also have a blog with a Python tutorial for bioinformatics, which is
>> based on the approach used by James Tisdall in his Beginning Perl for
>> Bioinformatics.  The url is http://python.genedrift.org
>>
>> I also have been toying with wxPython, after years of using wxWidgets
>> and planning to release my first interface based on it in the coming months.
>>
>> Cheers
>>
>> Paulo
>>
>>     
>>> Titus Brown wrote:
>>>       
>>>> hi folks,
>>>>
>>>> there are now 56 people subscribed to this list, so I thought I'd send
>>>> out a semi-official "welcome!"
>>>>
>>>> I'm curious -- what does everyone do, and what do they use Python for?
>>>>
>>>> I personally do a lot of genome analysis and data integration, and I am
>>>> most interested in parsers and interfaces to local command-line analysis
>>>> programs.  My particular interest is in regulatory genomics and
>>>> metagenomics, and I have written a few different packages (motif
>>>> searching, BLAST parsing, etc.) that I'll post to the list as new
>>>> versions come out.
>>>>
>>>> cheers,
>>>> --titus
>>>>
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>>>>
>>>>
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