[pygr-notify] Issue 76 in pygr: cannot create an annotation object of a current ensembl feature table

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Updates:
	Status: Assigned

Comment #5 on issue 76 by jqian.ubc: cannot create an annotation object of  
a current ensembl feature table
http://code.google.com/p/pygr/issues/detail?id=76

Sorry, Chris, but I don't think that's the problem.

The same script (attached) has no problem to create an annotation object of  
a feature
table from an older human core database, the homo_sapiens_core_47_36i.   
Even though
the seq_region table of homo_sapiens_core_47_36i also contains  
coord_system_id 15.

mysql> use homo_sapiens_core_47_36i;
mysql> select * from seq_region where seq_region_id=225896;
+---------------+-----------+-----------------+--------+
| seq_region_id | name      | coord_system_id | length |
+---------------+-----------+-----------------+--------+
|        225896 | NT_113964 |              15 | 204131 |
+---------------+-----------+-----------------+--------+
1 row in set (0.16 sec)



Attachments:
	issue76_homo_sapiens_47_36i.py  3.3 KB

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