[pygr-notify] [pygr commit] r61 - wiki

[codesite-noreply at google.com]

Author: ramccreary
Date: Tue Jun 24 20:11:37 2008
New Revision: 61

Modified:
   wiki/ServingDataUsingpygrData.wiki

Log:
Edited wiki page through web user interface.

Modified: wiki/ServingDataUsingpygrData.wiki
==============================================================================
--- wiki/ServingDataUsingpygrData.wiki	(original)
+++ wiki/ServingDataUsingpygrData.wiki	Tue Jun 24 20:11:37 2008
@@ -9,13 +9,13 @@

  First, import pygr.Data, then reference the pygr.Data resource you 
wish to serve. In this case, the reference is 
pygr.Data.Bio.Seq.Genome.ECOLI.ecoli. A NLMSA is a data structure used 
to store the genome/sequence maps. The alignment and sequence databases 
stored in the NLMSA can currently be accessed by pygr.Data.

-Next, the server is assigned a name; this name will be used a layer 
name within pygr.Data, as well as a port number. The port number can be 
set to any number that is currently available. Finally, the server can 
be accessed easily by the URL from any location, as long as the URL is 
set to the PYGRDATAPATH.
+Next, the server is assigned a name; this name will be used a layer 
name within pygr.Data, as well as a port number. The port number can be 
set to any number that is currently available. Finally, the server can 
be accessed easily by the URL from any location, as long as the URL is 
set to the PYGRDATAPATH. The default PYGRDATAPATH is 
http://biodb2.bioinformatics.ucla.edu:5000, and thus if this remains 
unchanged, the user will not be able to add or delete resources to/from 
pygr.Data. Furthermore, the server must be assigned a name 
(like 'rachel') that will also be used as the layer name for the 
pygr.Data resource when attempting to access it remotely.

-In order to access the newly-created server from a remote location, 
the server must be set as the PYGRDATAPATH. PYGRDATAPATH searches for 
pygr.Data resources in three steps: 1) in the current directory; 2) in 
the home directory; and 3) from the XMLRPC server. It is essential to 
assign the server as to PYGRDATAPATH, or an error will result. The 
correct address to give to PYGRDATAPATH would be the URL of your server 
(http://somehost:1215), with somehost as the server address.
+In order to access the newly-created server from a remote location, 
the server must be set as the PYGRDATAPATH. PYGRDATAPATH searches for 
pygr.Data resources in three steps: 1) in the current directory; 2) in 
the home directory; and 3) from the XMLRPC server. It is essential to 
assign the server as to PYGRDATAPATH, or an error will result. The 
correct address to give to PYGRDATAPATH would be the URL of your server 
(http://somehost:1215), with somehost as the server address. Firewalls 
may be present, and could potentially prevent access to the XML-RPC 
server, and thus should be addressed as need be.

 {{{
 import pygr.Data
 nlmsa=pygr.Data.Bio.Seq.Genome.ECOLI.ecoli
 server=pygr.Data.getResource.newServer('rachel',withIndex=True,port=1215)
 server.serve_forever()
-}}}
+}}}
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