[pygr-notify] [pygr commit] r60 - wiki

[codesite-noreply at google.com]

Author: ramccreary
Date: Tue Jun 24 14:37:52 2008
New Revision: 60

Modified:
   wiki/DataStorageUsingpygr.wiki

Log:
Edited wiki page through web user interface.

Modified: wiki/DataStorageUsingpygr.wiki
==============================================================================
--- wiki/DataStorageUsingpygr.wiki	(original)
+++ wiki/DataStorageUsingpygr.wiki	Tue Jun 24 14:37:52 2008
@@ -175,7 +175,7 @@
  Finally, the MySQL database for the annotation is built, and saved as 
the supplied database name. conn.commit() closes the database and the 
transaction and makes the changes permanent.


-Here, slicedb uses slices (intervals) from the SQLTable, which 
correspond to the gene sequences in the BLAST database previously 
constructed that contains the genome. AnnotationDB uses the sequence 
intervals are keys within a dictionary, and the values are the 
annotation objects, which are similar to sequence intervals in that 
they represent segments of the genome, but have annotation data 
associated with them. The two containers supplied for AnnotationDB are 
the slicedb, which contains the SQL table that holds the list of 
annotation intervals, and sequence database for the E. coli sequence intervals.
+Here, slicedb uses the annotation objects from the SQLTable, which 
correspond to the gene sequences in the BLAST database previously 
constructed that contains the genome. AnnotationDB uses the sequence 
intervals are keys within a dictionary, and the values are the 
annotation objects, which are similar to sequence intervals in that 
they represent segments of the genome, but have annotation data 
associated with them. The two containers supplied for AnnotationDB are 
the slicedb, which contains the SQL table that holds the list of 
annotation objects, and sequence database for the E. coli sequence.

  Then, a dictionary is created to hold the annotation database and the 
genome database together. PrefixUnionDict provides a cohesive interface 
to access the data in the two databases.