[pygr-notify] [pygr commit] r66 - wiki

[codesite-noreply at google.com]

Author: jqian.ubc
Date: Wed Jul  2 15:02:23 2008
New Revision: 66

Modified:
   wiki/PygrOnEnsembl.wiki

Log:
Edited wiki page through web user interface.

Modified: wiki/PygrOnEnsembl.wiki
==============================================================================
--- wiki/PygrOnEnsembl.wiki	(original)
+++ wiki/PygrOnEnsembl.wiki	Wed Jul  2 15:02:23 2008
@@ -65,9 +65,9 @@

 *Framework*

-*1.* the datamodel module 
[http://pygr-dev.googlegroups.com/web/datamodel.py?hl=en&gsc=jTDjIQsAAAACvf7hJcTbjD9Bv3w31oUB 
datamodel.py]: a BaseModel super class and its subclasses.  Each 
subclass represents a biological entity.
+*1.* the datamodel module 
[http://pygr-dev.googlegroups.com/web/datamodel.py?hl=en%253A&gsc=SDO_owsAAADv9zjLtj_JuEWS1q7AkBzo 
datamodel.py]: a BaseModel super class and its subclasses.  Each 
subclass represents a biological entity.

-*2.* the adaptor module 
[http://pygr-dev.googlegroups.com/web/adaptor.py?hl=en&gsc=jTDjIQsAAAACvf7hJcTbjD9Bv3w31oUB 
adaptor.py]: a driver class, a generic adaptor class (super class) and 
many specialized adaptor classes (sub classes).  Each specialized 
adaptor class employs pygr modules (mainly the sqlgraph and seqdb 
module) and provides access to its corresponding sql table in an 
ensembl core database.
+*2.* the adaptor module 
[http://pygr-dev.googlegroups.com/web/adaptor.py?hl=en%253A 
adaptor.py]: a driver class, a generic adaptor class (super class) and 
many specialized adaptor classes (sub classes).  Each specialized 
adaptor class employs pygr modules (mainly the sqlgraph and seqdb 
module) and provides access to its corresponding sql table in an 
ensembl core database.

 *3.* the supporting module (seqregion.py): extensions of the pygr core modules.

@@ -132,7 +132,7 @@

 *1.* mini-release upgraded to v0.03

-ensemblv0.02.tar.gz at 
[http://groups.google.com/group/pygr-dev/files?hl=en: pygr-dev files] 
(running environment: the latest pygr.  For detailed information on how 
to get a copy of it, please go to 
[http://code.google.com/p/pygr/wiki/ViewSource ViewSouce])
+ensemblv0.03.tar.gz at 
[http://groups.google.com/group/pygr-dev/files?hl=en: pygr-dev files] 
(running environment: the latest pygr.  For detailed information on how 
to get a copy of it, please go to 
[http://code.google.com/p/pygr/wiki/ViewSource ViewSouce])

  Alternatively, the current ensembl API code, together with pygr, can 
be retrieved from the public git repository.  To check out a copy, run 
the following instruction on the command line:

@@ -144,6 +144,6 @@

 They provide a preliminary test outcome for the functions implemented.

-[http://pygr-dev.googlegroups.com/web/testdatamodel.out?hl=en: 
testdatamodel.out] from running the sample code in datamodel.py, which 
gives a test result for the functions implemented in each specialized 
Datamodel class.
+[http://pygr-dev.googlegroups.com/web/testdatamodel.out?hl=en%253A: 
testdatamodel.out] from running the sample code in datamodel.py, which 
gives a test result for the functions implemented in each specialized 
Datamodel class.

-[http://pygr-dev.googlegroups.com/web/testadaptor.out?hl=en: 
testadaptor.out] from running the sample code in adaptor.py, which 
gives a test result for the functions implemented in the Driver class 
and in each specialized Adaptor class.
\ No newline at end of file
+[http://pygr-dev.googlegroups.com/web/testadaptor.out?hl=en%253A: 
testadaptor.out] from running the sample code in adaptor.py, which 
gives a test result for the functions implemented in the Driver class 
and in each specialized Adaptor class.
\ No newline at end of file