[protocols] blastall error "Could not calculate ungapped Karlin-Altschul parameters"
C. Titus Brown
ctb at msu.edu
Tue Aug 5 12:09:40 PDT 2014
yes, normal.
On Tue, Aug 05, 2014 at 03:05:07PM -0400, Michael R. Crusoe wrote:
> I'm running through the acceptance test based upon the eel-pond protocol
> for the first time.
>
> Is the following error from blastall normal?
>
> [blastall] WARNING: gi|9256636|ref|NP_061348.1|: Could not calculate
> ungapped Karlin-Altschul parameters due to an invalid query sequence or its
> translation. Please verify the query sequence(s) and/or filtering options
>
> --
> Michael R. Crusoe: Programmer & Bioinformatician mcrusoe at msu.edu
> @ the Genomics, Evolution, and Development lab; Michigan State U
> http://ged.msu.edu/ http://orcid.org/0000-0002-2961-9670 @biocrusoe
> <http://twitter.com/biocrusoe>
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--
C. Titus Brown, ctb at msu.edu
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