[protocols] blastall error "Could not calculate ungapped Karlin-Altschul parameters"

Michael R. Crusoe mcrusoe at msu.edu
Tue Aug 5 12:05:07 PDT 2014


I'm running through the acceptance test based upon the eel-pond protocol
for the first time.

Is the following error from blastall normal?

[blastall] WARNING: gi|9256636|ref|NP_061348.1|: Could not calculate
ungapped Karlin-Altschul parameters due to an invalid query sequence or its
translation. Please verify the query sequence(s) and/or filtering options

-- 
Michael R. Crusoe:  Programmer & Bioinformatician   mcrusoe at msu.edu
 @ the Genomics, Evolution, and Development lab; Michigan State U
http://ged.msu.edu/ http://orcid.org/0000-0002-2961-9670 @biocrusoe
<http://twitter.com/biocrusoe>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.idyll.org/pipermail/protocols/attachments/20140805/10398b68/attachment.htm>


More information about the protocols mailing list