[khmer] khmer users, and citations.
Erich Schwarz
ems at emstech.org
Wed Jun 3 07:20:26 PDT 2015
On Wed, 3 Jun 2015, C. Titus Brown wrote:
> I?m putting together a renewal request for the main khmer funding
> (NIH R01), and so I?m gathering information on users and
> citations.
>
> 2. I?ve been updating citation information, and I?d appreciate
> pointers to any papers you know of that have used khmer.
Two citations that I didn't find in your list:
1. Schwarz et al. (2013): major, crucial use of khmer to allow
assembly of noisy genomic data; has you et al. as coauthors!
http://www.ncbi.nlm.nih.gov/pubmed/23985341
2. Schwarz et al. (2015): used khmer to allow RNA-scaffolding with
large RNA-seq data sets (RNA-scaffolding did not work unless khmer
was first used to filter the RNA-seq reads, though the details had
to be buried in a large Supplemental Materials text).
http://www.ncbi.nlm.nih.gov/pubmed/25730766
--Erich
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