[khmer] Error message from normalize-by-median "Hash writing file access failure:: Bad address"

C. Titus Brown ctb at msu.edu
Fri Aug 1 14:04:37 PDT 2014


On Fri, Aug 01, 2014 at 03:59:50PM -0500, Chris Hemme wrote:
> When I try to run normalize-by-median as follows:
> 
> normalize-by-median.py -p -k <kmer> -N 4 -x <value> -s <file> -o <file>
> <input_file>
> 
> I get the error:
> 
> Hash writing file access failure:: Bad address
> 
> The kh file is created but is filled with blank lines.  The sequence files
> are being generated as expected.  I see in the script where the error is
> occurring but I don't know Python well enough to see what's actually
> causing the error.  Any ideas on what's happening and how to fix it?
> 
> ==
> Dr. Christopher L. Hemme
> 101 David L. Boren Blvd
> Institute for Environmental Genomics
> Department of Microbiology and Plant Sciences
> University of Oklahoma
> Norman, OK 73071
> Office Phone: (405) 325-3052

Hi Chris!

Neat error!  Could you copy/paste the traceback message, please?

thanks,
--titus
-- 
C. Titus Brown, ctb at msu.edu



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