[khmer] Error message from normalize-by-median "Hash writing file access failure:: Bad address"

Chris Hemme hemmecl at gmail.com
Fri Aug 1 13:59:50 PDT 2014


When I try to run normalize-by-median as follows:

normalize-by-median.py -p -k <kmer> -N 4 -x <value> -s <file> -o <file>
<input_file>

I get the error:

Hash writing file access failure:: Bad address

The kh file is created but is filled with blank lines.  The sequence files
are being generated as expected.  I see in the script where the error is
occurring but I don't know Python well enough to see what's actually
causing the error.  Any ideas on what's happening and how to fix it?

==
Dr. Christopher L. Hemme
101 David L. Boren Blvd
Institute for Environmental Genomics
Department of Microbiology and Plant Sciences
University of Oklahoma
Norman, OK 73071
Office Phone: (405) 325-3052
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