[khmer] keep kmers stranded?

[Karl Nordström]

Hi again,

I'm advancing by piecing together snippets from all the available scripts.
One question though.

Does K have an upper limit? Loading a counting hash with K=31 and
everything is fine, but with K=41 the following error appears:

python: ktable.cc:21: khmer::HashIntoType khmer::_hash(const char*,
khmer::WordLength, khmer::HashIntoType&, khmer::HashIntoType&): Assertion
`k <= sizeof(HashIntoType)*4' failed.
Aborted

Or is this due to only using one strand? The code looked like a limitation.

Best,

Karl


On Mon, Jul 29, 2013 at 6:25 PM, C. Titus Brown <ctb at msu.edu> wrote:

> On Mon, Jul 29, 2013 at 05:35:13PM +0200, Karl Nordstr?m wrote:
> > thank you very much. My intent was to write a simple filter with the help
> > of the data structures, not anything fancy. Learn how to make use of this
> > resource.
> >
> > I will try and see what happens.
>
> Cool -- let us know how it works out ;)
>
> cheers,
> --titus
>
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