[bip] welcome!

[Brandon King]

Hi Everyone,

Well, I have Python for bioinformatics since 2001 in the Wold Lab at 
Caltech. I have worked on a Python/PostgreSQL based spatial query 
annotation database called BioHub <http://woldlab.caltech.edu/biohub/>.  
Also, I use Python for data conversion, batch blasting, miRNA analysis, 
automation, motif searching, microarray analysis, etc.

We are also have minimal Python layer for Mussa 
<http://mussa.caltech.edu/> (C++/Qt/OpenGL; multi-species sequence 
comparison tool), but we hope to wrap the OpenGL sequence browser widget 
for use with PyQt in the future. Other tools people may find interesting 
(in various states of usefulness) can be found here 
<http://woldlab.caltech.edu/html/software/>.

That is it for now... back to coding.

-Brandon King
Caltech Wold Lab &
Caltech Genetics & Genomics Lab

Titus Brown wrote:
> hi folks,
>
> there are now 56 people subscribed to this list, so I thought I'd send
> out a semi-official "welcome!"
>
> I'm curious -- what does everyone do, and what do they use Python for?
>
> I personally do a lot of genome analysis and data integration, and I am
> most interested in parsers and interfaces to local command-line analysis
> programs.  My particular interest is in regulatory genomics and
> metagenomics, and I have written a few different packages (motif
> searching, BLAST parsing, etc.) that I'll post to the list as new
> versions come out.
>
> cheers,
> --titus
>
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