[pygr-notify] Issue 134 in pygr: UCSCEnsemblInterface fails with Genome doesn't exist error
pygr at googlecode.com
pygr at googlecode.com
Tue Sep 20 13:21:53 PDT 2011
Updates:
Owner: cjlee... at gmail.com
Comment #1 on issue 134 by mare... at gmail.com: UCSCEnsemblInterface fails
with Genome doesn't exist error
http://code.google.com/p/pygr/issues/detail?id=134
This is definitely a useful change and one worth keeping, in case of future
changes to the UCSC database which could make hitherto-unique rows lose
their uniqueness. However, IMHO we need a bit more here before this issue
can be closed - namely, it may make sense to actually choose among the
returned rows. Two options (which could be combined) spring to mind:
- choosing the latest Ensembl-dataset version available for the specified
UCSC genome,
- letting the user specify the Ensembl version as well.
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