[pygr-notify] Issue 121 in pygr: formatdb fail tests litters file system with empty files

pygr at googlecode.com pygr at googlecode.com
Mon Oct 26 18:53:10 PDT 2009


Status: New
Owner: pygr-bug... at googlegroups.com
Labels: Type-Defect Priority-Medium

New issue 121 by the.good.doctor.is.in: formatdb fail tests litters file  
system with empty files
http://code.google.com/p/pygr/issues/detail?id=121

After running the BLAST tests for pygr, 'foobarbaz.*' files show up
in my home directory:

/u/t/foobarbaz.fa.nhr
/u/t/foobarbaz.fa.nin
/u/t/foobarbaz.fa.nsq
/u/t/foobarbaz.fa.ntm

this is presumably because formatdb creates them before checking to see if
foobarbaz.fa exists.

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