[pygr-notify] Issue 61 in pygr: adding logging functionality

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Status: Accepted
Owner: istvan.albert
Labels: Type-Enhancement Priority-Medium

New issue 61 by istvan.albert: adding logging functionality
http://code.google.com/p/pygr/issues/detail?id=61

Purpose of code changes on this branch:

Adding better message logging facilities. Python offers a well behaved
logging module that can be used to format and filter messages. We should
replace all print >>stderr messages with logging calls.

logger.info, logger.warn etc.

See code here:
http://github.com/ialbert/pygr-windows/blob/bed6da2befb2d01bcf5e9ceebdca6115849a1b00/pygr/logger.py

The code above prints the level information, module and function that sent
the message and the message itself for example:

DEBUG  blast.blast_program Could not start the process

Potential pitfall: backwards compatibility (older pythons may have fewer
formatting options)


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