[pygr-notify] [pygr commit] r132 - wiki

[codesite-noreply at google.com]

Author: marecki
Date: Tue Feb  3 14:50:00 2009
New Revision: 132

Modified:
    wiki/GenomeCalculationsUsingpygr.wiki

Log:
Added a "may be out of sync" warning.

Modified: wiki/GenomeCalculationsUsingpygr.wiki
==============================================================================
--- wiki/GenomeCalculationsUsingpygr.wiki	(original)
+++ wiki/GenomeCalculationsUsingpygr.wiki	Tue Feb  3 14:50:00 2009
@@ -1,5 +1,7 @@
  #summary Performs basic calculation on a genome using pygr

+*WARNING*: This is a code-example Wiki page and as such _may_ be out of  
sync with current versions of Pygr. It will be removed or refactored once  
our doctest infrastructure has been deployed.
+
  = Why It's Useful =

  pygr's data storage tools allow easy manipulation of the information they  
contain. In this example, I take the entire E. coli genome, as well as the  
corresponding annotations, and use AnnotationDB, BlastDB, as well as  
several modules within pygr to store the gene intervals and their  
corresponding sequences, and then count the number of nucleotides per gene  
by iterating over all of the genes. Finally, the average number of  
nucleotides per gene is calculated using the full count of the number of  
bases in the full genome sequence.