[pygr-notify] [pygr] r254 committed - Mentioned data sets for restartIterator_megatest.

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Revision: 254
Author: marecki
Date: Thu Aug  6 16:23:21 2009
Log: Mentioned data sets for restartIterator_megatest.
http://code.google.com/p/pygr/source/detail?r=254

Modified:
  /wiki/MegatestSetup.wiki

=======================================
--- /wiki/MegatestSetup.wiki	Wed Jul 29 19:35:36 2009
+++ /wiki/MegatestSetup.wiki	Thu Aug  6 16:23:21 2009
@@ -88,6 +88,8 @@
    * Bio.Seq.Genome.TETNG.tetNig1
    * Bio.Seq.Genome.TUPGB.tupBel1
    * Bio.Seq.Genome.XENTR.xenTro2
+ # For the _restartIterator_ megatest
+  * Bio.Seq.Genome.DROME.dm3

  Once the files have been downloaded they require no further attention.

@@ -103,10 +105,12 @@
    * axt_data.tar
    * maf_data3.tar
    * maf_test3.tar
+ # NLMSA for the _restartIterator_ megatests
+  * *FIXME*: TBA
   # Miscellaneous files
    * input_and_results.tar (note: doesn't create its own directory!)

-This time some post-installation steps are necessary before the data can  
be used: the files _dm2_multiz15way.seqDictP_ (from maf_test.tar) and  
_hg18_multiz28way.seqDictP_ (from maf_test3.tar) contain hardcoded paths  
which will need to be changed to reflect your directory structure. Assuming  
the final path components are to stay the same (i.e. you keep the data in  
the directories in which they came in the archives), simply open the files  
in question using an ordinary text editor and replace all the occurrences  
of _/result/pygr_megatest_ (*FIXME*: double-check this!) with the path of  
your choice.
+This time some post-installation steps are necessary before the data can  
be used: the files _dm2_multiz15way.seqDictP_ (from maf_test.tar),  
_hg18_multiz28way.seqDictP_ (from maf_test3.tar) and  
_dm3_multiz15way.seqDictP_ (from *FIXME*: TBA) contain hardcoded paths  
which will need to be changed to reflect your directory structure. Assuming  
the final path components are to stay the same (i.e. you keep the data in  
the directories in which they came in the archives), simply open the files  
in question using an ordinary text editor and replace all the occurrences  
of _/result/pygr_megatest_ (*FIXME*: double-check this!) with the path of  
your choice.


  === MySQL data ===