[pygr-notify] Issue 40 in pygr: add NLMSA convenience method for loading aligned intervals from any source

[codesite-noreply at google.com]

Comment #9 on issue 40 by the.good.doctor.is.in: add NLMSA convenience  
method for loading aligned intervals from any source
http://code.google.com/p/pygr/issues/detail?id=40

Huh, odd thing with the test code -- I must have detabbed it somehow!?

The srcDB=al.seqDict line breaks in readAlignedCoords because al is not  
available in
rAC; it's only passed into add_aligned_intervals.  Try running the  
(re-tabbed ;)
nlmsa_test code without the associated nlmsa and classutil fixes; I've put  
these in
branch review_issue40_x in the github.com/ctb/pygr repo.


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