[pygr-notify] Issue 35 in pygr: Update docs for 0.8 refactoring

codesite-noreply at google.com codesite-noreply at google.com
Tue Oct 14 17:16:06 PDT 2008


Issue 35: Update docs for 0.8 refactoring
http://code.google.com/p/pygr/issues/detail?id=35

Comment #1 by robert.d.kirkpatrick:
The tutorial at  
http://www.doe-mbi.ucla.edu/~leec/newpygrdocs/seq-align.html is
linked to from the Google Code site docs, but the tutorial is out of date.  
See
section 1.1.2:

     import pygr.Data # FINDS DATA WHEREVER IT'S REGISTERED
     msa = pygr.Data.Bio.Seq.MSA.ucsc17() # SANTA CRUZ 17-GENOME ALIGNMENT
     exons = pygr.Data.Leelab.ASAP2.hg17.exons() # ASAP2 HUMAN EXONS

pygr.Data.Bio.Seq.MSA.ucsc17 doesn't exist, neither does
pygr.Data.Leelab.ASAP2.hg17.exons.

The example in the latest git repo looks good though.  Need to get this
non-GoogleCode link updated.



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