[pygr-notify] [pygr commit] r51 - wiki

[codesite-noreply at google.com]

Author: deepreds
Date: Mon Jun 23 16:50:51 2008
New Revision: 51

Added:
   wiki/PygrResourceDownloader.wiki

Log:
Created wiki page through web user interface.

Added: wiki/PygrResourceDownloader.wiki
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+++ wiki/PygrResourceDownloader.wiki	Mon Jun 23 16:50:51 2008
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+One can easily download pre-built pygr.Data resources into your localdisk.
+
+  * import os
+  * os.environ['PYGRDATAPATH'] = 'http://biodb.bioinformatics.ucla.edu:5000'
+  * import pygr.Data
+
+For seqdb.BlastDB, you have to setup PYGRDATADOWNLOAD path.
+
+  * os.environ['PYGRDATADOWNLOAD'] = '/my/seqdb/path'
+
+  * hg18 = pygr.Data.Seq.Genome.HUMAN.hg18()
+
+Above line will initiate downloading and saving hg18 into your 
PYGRDATADOWNLOAD path.
+
+For NLMSA, you have to setup PYGRDATABUILDDIR path..
+
+  * os.environ['PYGRDATABUILDER'] = '/my/nlmsa/path'
+
+  * hg18_multiz28way = pygr.Data.MSA.UCSC.hg18_multiz28way()
+
+Above line will initiate downloading and saving hg18_multiz28way into 
your PYGRDATABUILDER path.
+
+If you don't have huge disk space, don't forget to delete intermediate 
compressed files and text files.
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