[pygr-notify] [pygr commit] r116 - wiki

[codesite-noreply at google.com]

Author: marecki
Date: Fri Dec 19 18:40:24 2008
New Revision: 116

Modified:
    wiki/MegatestSetup.wiki

Log:
Some minor fixes to the last import.

Modified: wiki/MegatestSetup.wiki
==============================================================================
--- wiki/MegatestSetup.wiki	(original)
+++ wiki/MegatestSetup.wiki	Fri Dec 19 18:40:24 2008
@@ -122,19 +122,19 @@
  == Setting up the Database ==

  Next step is to prepare MySQL database in which all above txt input files  
are saved. First, you need to make the _.my.cnf_ file in your HOME  
directory.
-{{
- [client]
- port=3306
- host=your_database_server
- user=your_account
- password=your_password
-}}
+{{{
+[client]
+port=3306
+host=your_database_server
+user=your_account
+password=your_password
+}}}
  Pygr will automatically try to load ~/.my.cnf to connect MySQL database.

  Then create a database named PYGRDB_JAN06. Files created by _mysqldump_  
are available at http://biodb.bioinformatics.ucla.edu/MEGATEST/ . You can  
import all these .sql files by _mysql_ command. MySQL version 5 or higher  
is recommended for compatability.

  Same NLMSA building Megatest will run twice, one for file-saving version  
and
-the other for MySQL version. In each step, text <-> binary conversion test
+the other for MySQL version. In each step, text-to-binary conversion test
  is included.