[pygr-notify] Issue 34 in pygr: Refactor BLAST support as a mapping

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Updates:
	Status: Fixed
	Cc: marecki ti... at idyll.org

Comment #2 on issue 34 by cjlee112: Refactor BLAST support as a mapping
http://code.google.com/p/pygr/issues/detail?id=34

Implemented this by pulling blast functionality out into a new module  
pygr.blast.
Updated the docs to reflect this.  Key points:

- SequenceFileDB is the new standard database class to use
- BlastDB is deprecated; use SequenceFileDB instead.  It is still provided,  
for
backwards compatibility with old code and data stored in pygr.Data.  It is  
just a
subclass of SequenceFileDB that provides some convenience methods for the  
old-style
blast interface.

Added one new test to the test suite that tests the new BlastMapping  
interface.

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