<div dir="ltr">Hi folks,<br><div class="gmail_quote"><br><br><div dir="ltr"><a href="https://khmer-protocols.readthedocs.org/en/v0.8/metagenomics/1-quality.html" target="_blank">https://khmer-protocols.readthedocs.org/en/v0.8/metagenomics/1-quality.html</a><div>
<br></div><div>Is there a reason s2_se leftover from trimmomatic are excluded from this? These files are generally smaller in my datasets (though I'm missing the biological reason for this). As far as I know, these are the second pair's adapter-trimmed and possibly now unpaired. I think they should be treated as s1_se? i.e., quality trimmed and then concatenated with all single ends.</div>
<div><br></div><div>Cheers,</div><div>-adina</div><div><br></div><div><br></div></div>
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