[pony-build] Some initial timeout stuff in _run_command

[Max Laite]

http://github.com/mlaite/pony-build/blob/subprocess/client/pony_client.py#L93

In the process of writing a test for this......

One thing I need to discuss is, do we split the timeout off to its own
func?(not sure if its even really possible like that with current setup of
_run_command) or do we just add timeout argument to all the *Clones so that
you can specify in build scripts, then when the *Clones call _runPcommand
they pass timeout like that?

Do we do two separate versions of _run_command?

Max
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