[ngs-2012] more links for Monday morning's lecture

[Istvan Albert]

Hello,

beside lectures 10,11 and 12 that I have sent out already I also covered:

Bioawk
=====

homepage: https://github.com/lh3/bioawk

Installation goes like this:

apt-get install bison
git clone https://github.com/lh3/bioawk
cd bioawk
make

A more readable Bioawk help file with examples can be found at:

https://github.com/ialbert/bioawk/blob/master/README.bio.rst

Utilities
======

The awk bioinformatics utilities:

https://github.com/ialbert/bioawk-tools.git

The chip-fragment size estimator with detailed help:

https://github.com/ialbert/bioawk-tools/blob/master/chipfrag.awk


best,

Istvan

-- 
Istvan Albert
Associate Professor, Bioinformatics
Pennsylvania State University
http://www.personal.psu.edu/iua1/