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I have used split-paired-reads.py for this purpose when normalizing PE reads, I assume it should work the same here.
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<div class="">chris</div>
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<div class="">On Jun 5, 2015, at 8:38 AM, Diane Hatziioanou <<a href="mailto:dianehioanou@gmail.com" class="">dianehioanou@gmail.com</a>> wrote:</div>
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<div class="">Hello all again,<br class="">
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I have a question.<br class="">
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I want to use the slice-reads-by-coverage.py but I've got PE data which<span class=""><span class=""></span></span> I would like to keep as PE data. Is slice-reads-by-coverage.py able to deal with interleaved PE data and keep it PE, can it manage it in another
format or am I asking for too much and would have to use single ends and try pairing them back after its done?<br class="">
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Thanks,<br class="">
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Diane<br class="">
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<pre cols="72" class="">--
Dr Diane Hatziioanou
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<a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__twitter.com_DianeHIoanou&d=AwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=dRcvnkEofGJzLdh7UkycULWyPkXIh41x5bZwerAUmho&s=IXFKb657NAEdn_sXAHqCdOLY8MG2FfADm3AWWqWIMAk&e=" target="_blank" class="">https://twitter.com/DianeHIoanou</a></pre>
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