<p dir="ltr">Hello Alexander,</p>
<p dir="ltr">Thank you for writing, it is always nice to hear from a user.</p>
<p dir="ltr">Version 1.4 hasn't been released yet. It relies upon a newer version of screen (v0.8) that is not backwards compatible with khmer v1.3; perhaps that is the source of your problem?</p>
<p dir="ltr">Are you installing inside a virtualenv?</p>
<p dir="ltr">To directly install the development version of khmer I would recommend running `pip uninstall -y screed khmer` several times followed by `pip install -e git+<a href="https://github.com/ged-lab/khmer.git@master#egg=khmer`">https://github.com/ged-lab/khmer.git@master#egg=khmer`</a> to sort out the dependencies properly.</p>
<p dir="ltr">Please let us know if that works!<br>
</p>
<br><div class="gmail_quote">On Wed, Apr 29, 2015, 03:42 Alexander J Brandt <<a href="mailto:ajbrandt@berkeley.edu">ajbrandt@berkeley.edu</a>> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hello KHMER Project,<div><br></div><div>I'm attempting to use khmer for 3 pass digital normalization, but I'm having some problems getting the correct version of the software installed. I used the pip command with my virtualenv, but this gave me the 2014/1.3 version of khmer (which doesn't <i>seem</i> to output fastq files like the newer version seems to, though that could be an error in usage on my end). I've been able to run the digital normalization fine otherwise.</div><div><br></div><div>When I attempt to clone the .git repository and do a local install on my system (which is a shared cluster environment), I get lots of errors. Before I proceed any further, do you have any suggestions?</div><div><br></div><div>Thanks so much!</div><div><br></div><div>Alex Brandt</div></div>
</blockquote></div>