<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body dir="auto"><div>Just try pip (not pip2). Sorry for all the mess :(</div><div><br>On Jul 6, 2014, at 7:53 PM, Efraim Rodrigues <<a href="mailto:efraimnaassom@gmail.com">efraimnaassom@gmail.com</a>> wrote:<br><br></div><blockquote type="cite"><div><div dir="ltr">Hi. Thanks for your response.<div><br></div><div>It looks like the we are supposed to choose the version of the virtualenv. I found all the versions here <a href="https://pypi.python.org/packages/source/v/virtualenv/">https://pypi.python.org/packages/source/v/virtualenv/</a> so I am followed these steps using the newest version of the virtualen, in this case, I believe that is, <a href="https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.9.tar.gz">https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.9.tar.gz</a></div>
<div><br></div><div>Anyway, I ran all the tests and it still returns the same problem.</div><div><br></div><blockquote style="margin:0px 0px 0px 40px;border:none;padding:0px"><div><div> make test</div></div><div><div>pip2 install --user nose || pip2 install nose</div>
</div><div><div>/bin/sh: pip2: command not found</div></div><div><div>/bin/sh: pip2: command not found</div></div><div><div>make: *** [test] Error 127</div></div><div><br></div></blockquote>In fact, there is no pip2 inside khmerEnv. I can just see these files:<div>
<br></div><div><div>activate activate.fish easy_install pip python python2.7</div><div>activate.csh activate_this.py easy_install-2.7 pip-2.7 python2</div></div><div><br></div><div>Should I try another version of virutalenv or perhaps another similar tool?</div>
<div><br></div><div>Thank y'all for trying to help me.</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Sun, Jul 6, 2014 at 5:25 PM, C. Titus Brown <span dir="ltr"><<a href="mailto:ctb@msu.edu" target="_blank">ctb@msu.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="">On Sat, Jul 05, 2014 at 03:01:47PM -0500, Efraim Rodrigues wrote:<br>
> Hi everyone,<br>
><br>
> Actually, when I tried to install by running 'make test', it returned the<br>
> following message:<br>
><br>
> pip2 install --user nose || pip2 install nose<br>
> /bin/sh: pip2: command not found<br>
> /bin/sh: pip2: command not found<br>
><br>
><br>
> Even though we have python/2.7 installed, It looks like my system has<br>
> python/2.6 as default. Hence, in order to install 'khmer', I followed these<br>
> steps:<br>
><br>
> module load python/2.7<br>
><br>
> python setup.py install --user<br>
><br>
> Apparently, it worked to install it locally, however I'm not sure about any<br>
> additional file or module.<br>
<br>
</div>OK, I would suggest running the tests inside of virtualenv. try:<br>
<br>
curl -O <a href="https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.x.y.tar.gz" target="_blank">https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.x.y.tar.gz</a><br>
tar xzf virtualenv*<br>
cd virtualenv-*; python2.7 virtualenv.py ../khmerEnv; cd ..<br>
source khmerEnv/bin/activate<br>
<br>
and then 'make test'.<br>
<br>
thanks!<br>
<span class="HOEnZb"><font color="#888888">--titus<br>
<br>
</font></span></blockquote></div><br></div>
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