<div dir="ltr"><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">Hello,</div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif"><br></div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">
This bug has now been fixed in the master branch of khmer. Thanks to @chuckpr and Emeric for finding the bug and testing the fix.</div></div><div class="gmail_extra"><br clear="all"><div><div dir="ltr">--<br><div><font face="garamond, serif">Ram</font></div>
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<br><br><div class="gmail_quote">On Wed, Apr 16, 2014 at 9:44 AM, Ramakrishnan Srinivasan <span dir="ltr"><<a href="mailto:ramrs@nyu.edu" target="_blank">ramrs@nyu.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr"><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif">Hello Emeric,</div><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif"><br></div><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif">
Thank you for the email. I just checked the code, and there seems to be a tiny bug. It should be fixed within the day, and I shall send an update once the patch is done.</div><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif">
<br></div><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif">Thank you for identifying the bug!</div><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif"><br></div>
<div class="gmail_default" style="font-family:'trebuchet ms',sans-serif">
If you would like to correct it on your local copy, you might try changing the '.ht' in Line #74, Col 28 of scripts/make-initial-stoptags.py to '.pt' so it looks like this:</div><div class="gmail_default" style="font-family:'trebuchet ms',sans-serif">
<br></div><div class="gmail_default"><font face="trebuchet ms, sans-serif"> infiles = [graphbase + '.pt', graphbase + '.tagset']</font><br></div></div><div class="gmail_extra"><br clear="all"><div>
<div dir="ltr">--<br><div><font face="garamond, serif">Ram</font></div></div></div><div><div class="h5">
<br><br><div class="gmail_quote">On Wed, Apr 16, 2014 at 8:55 AM, Emeric Sevin <span dir="ltr"><<a href="mailto:emeric.sevin@u-bordeaux.fr" target="_blank">emeric.sevin@u-bordeaux.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi all,<br>
<br>
Not sure this is the designated list for my question, but I just can't seem to find a better destination contact.<br>
<br>
My problem will likely be pretty low-profile, but I've tried to run the Iowa Corn test case you provided (<a href="https://khmer.readthedocs.org/en/latest/partitioning-big-data.html" target="_blank">https://khmer.readthedocs.<u></u>org/en/latest/partitioning-<u></u>big-data.html</a>), and I'm confronted with a frustrating setback. Basically everything works fine during the first partition step, but when I try to break up the lump in the 2nd pass, make-initial-stoptags.py keeps exiting with this message:<br>
<br>
ERROR: Input file <a href="http://lump.ht" target="_blank">lump.ht</a> does not exist; exiting<br>
<br>
Indeed, no <a href="http://lump.ht" target="_blank">lump.ht</a> file is created by load-graph.py, and I can't find any option or trigger which would allow me to correct that...<br>
even though I've been following your cookbook almost to the letter (except memory-wise)....<br>
<br>
Thanks in advance for your answer,<br>
Best regards<br>
Emeric<br>
<br>
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