<div dir="ltr">Hello,<div><br></div><div>Which tutorial are you using?</div><div><br></div><div>If you are following the khmer-protocols then place to ask for help is <a href="https://github.com/ged-lab/khmer-protocols/issues?state=open">https://github.com/ged-lab/khmer-protocols/issues?state=open</a></div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">On Mon, Mar 3, 2014 at 3:31 PM, Shu CHEN <span dir="ltr"><<a href="mailto:szc0049@tigermail.auburn.edu" target="_blank">szc0049@tigermail.auburn.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div style="font-size:12pt;font-family:Calibri,Arial,Helvetica,sans-serif">
<div style="font-size:12pt;font-family:calibri,arial,helvetica,sans-serif">
<p>Hi<span style="font-size:12pt">, </span></p>
<p><br>
</p>
<p>I followed your tutorial of using Khmer in the amzon EC2. After I ran the 'make test', it gave me a error feed back as:<br>
</p>
<p>tests.test_scripts.test_normalize_by_median_version ... ERROR<br>
<br>
======================================================================<br>
ERROR: tests.test_scripts.test_normalize_by_median_version<br>
----------------------------------------------------------------------<br>
Traceback (most recent call last):<br>
File "/usr/lib/pymodules/python2.7/nose/case.py", line 187, in runTest<br>
self.test(*self.arg)<br>
File "/home/ubuntu/khmer/tests/test_scripts.py", line 392, in test_normalize_by_median_version<br>
status, out, err = popenscript(script, args)<br>
File "/home/ubuntu/khmer/tests/test_scripts.py", line 135, in popenscript<br>
raise Exception(status, out, err)<br>
Exception: (1, '', 'Traceback (most recent call last):\n File "/home/ubuntu/khmer/scripts/normalize-by-median.py", line 19, in <module>\n import khmer\nImportError: No module named khmer\n')<br>
-------------------- >> begin captured stdout << ---------------------<br>
running: /home/ubuntu/khmer/scripts/normalize-by-median.py in: None<br>
arguments ['--version']<br>
</p>
<p>Can you help me fix this issue?<br>
</p>
<div>
<p><br>
</p>
<div style="font-family:tahoma;font-size:13px">
<div style="font-family:tahoma;font-size:13px">
<p>Shu Chen</p>
<p>Ph.D. Student</p>
<p>Department of Agronomy and Soils</p>
<p>RM 165, Funchess Hall </p>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div dir="ltr"><span style="font-family:'courier new',monospace;font-size:small">Michael R. Crusoe: Programmer & Bioinformatician </span><a href="mailto:mcrusoe@msu.edu" style="color:rgb(17,85,204);font-family:'courier new',monospace;font-size:small" target="_blank">mcrusoe@msu.edu</a><br style="font-family:'courier new',monospace;font-size:small">
<span style="font-family:'courier new',monospace;font-size:small"> @ the Genomics, Evolution, and Development lab; Michigan State U</span><br style="font-family:'courier new',monospace;font-size:small"><a href="http://ged.msu.edu/" style="color:rgb(17,85,204);font-family:'courier new',monospace;font-size:small" target="_blank">http://ged.msu.edu/</a><span style="font-family:'courier new',monospace;font-size:small"> </span><a href="http://orcid.org/0000-0002-2961-9670" style="color:rgb(17,85,204);font-family:'courier new',monospace;font-size:small" target="_blank">http://orcid.org/0000-0002-2961-9670</a><span style="font-family:'courier new',monospace;font-size:small"> </span><a href="http://twitter.com/biocrusoe" style="color:rgb(17,85,204);font-family:'courier new',monospace;font-size:small" target="_blank">@biocrusoe</a><br>
</div>
</div>