<div dir="ltr"><div><span style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px">[including the mailing list for posterity, mea culpa]</span></div><span style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px"><div>
<span style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px"><br></span></div>It is in the protocols-v0.8.3 branch of khmer:</span><div style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px"><br>
</div><div style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px"><a href="https://github.com/ged-lab/khmer/blob/protocols-v0.8.3/sandbox/calc-best-assembly.py" target="_blank">https://github.com/ged-lab/khmer/blob/protocols-v0.8.3/sandbox/calc-best-assembly.py</a><br>
</div><div style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px"><br></div><div style="color:rgb(0,0,0);font-family:arial,sans-serif;font-size:13px">Install instructions are at: <a href="https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/1-quality.html#install-software" target="_blank">https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/1-quality.html#install-software</a></div>
<div><br></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Fri, Jan 3, 2014 at 4:07 PM, Yiseul Kim <span dir="ltr"><<a href="mailto:kimyise2@msu.edu" target="_blank">kimyise2@msu.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Hello,</div><div><br></div><div>Could someone help me with finding the location of <b>calc-best-assembly.py</b>? The newly released metagenomic assembly protocol (<a href="https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html" target="_blank">https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html</a>) says it is located under /khmer/sandbox but I am not able to find it. Any help would be appreciated.</div>
<br clear="all"><div><div dir="ltr"><div><span style="color:rgb(102,102,102);font-size:small">Regards,</span><br></div><div><font color="#666666">Yiseul</font></div></div></div>
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<br></blockquote></div><br></div><br clear="all"><div><br></div>-- <br><div dir="ltr"><font face="courier new, monospace">Michael R. Crusoe: Software Engineer and Bioinformatician <a href="mailto:mcrusoe@msu.edu" target="_blank">mcrusoe@msu.edu</a><br>
@ the Genomics, Evolution, and Development lab; Michigan State University<br><a href="http://ged.msu.edu/" target="_blank">http://ged.msu.edu/</a> <a href="http://orcid.org/0000-0002-2961-9670" target="_blank">http://orcid.org/0000-0002-2961-9670</a> <a href="http://twitter.com/biocrusoe" target="_blank">@biocrusoe</a></font><br>
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