<div dir="ltr">Hi,<div><br></div><div>I encountered two issues with the khmer-0.7 pip installation.</div><div><br></div><div>$cat /proc/version</div><div>Linux version 2.6.32-220.23.1.el6.x86_64 (<a href="mailto:mockbuild@c6b5.bsys.dev.centos.org">mockbuild@c6b5.bsys.dev.centos.org</a>) (gcc version 4.4.6 20110731 (Red Hat 4.4.6-3) (GCC)</div>
<div><br></div><div>$python --version<br></div>
<div>Python 2.7.5</div><div><br></div><div><br></div><div><br></div><div>1. The versioneer dependency required a manual installation of versioneer, which is simple enough but involved manually git-cloning <a href="https://github.com/warner/python-versioneer">https://github.com/warner/python-versioneer</a> and moving versioneer.py into the python path. I'm not experienced enough with python to suggest how to streamline this, though.<br>
</div><div><br></div><div><br></div><div><br></div><div>2. Installation error </div><div><br></div><div><div>Downloading/unpacking khmer</div><div> Running setup.py egg_info for package khmer</div><div> Downloading <a href="http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz">http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz</a></div>
<div> Extracting in /tmp/tmpgad1YR</div><div> Now working in /tmp/tmpgad1YR/distribute-0.6.14</div><div> Building a Distribute egg in /home/dylan/.virtualenvs/khmer-test/build/khmer</div><div> /home/dylan/.virtualenvs/khmer-test/build/khmer/distribute-0.6.14-py2.7.egg</div>
<div> Traceback (most recent call last):</div><div> File "<string>", line 16, in <module></div><div> File "/home/dylan/.virtualenvs/khmer-test/build/khmer/setup.py", line 103, in <module></div>
<div> "long_description": open("README.rst").read(),</div><div> IOError: [Errno 2] No such file or directory: 'README.rst'</div><div> Complete output from command python setup.py egg_info:</div>
<div> Downloading <a href="http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz">http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz</a></div><div><br></div><div>Extracting in /tmp/tmpgad1YR</div>
<div><br></div><div>Now working in /tmp/tmpgad1YR/distribute-0.6.14</div><div><br></div><div>Building a Distribute egg in /home/dylan/.virtualenvs/khmer-test/build/khmer</div><div><br></div><div>/home/dylan/.virtualenvs/khmer-test/build/khmer/distribute-0.6.14-py2.7.egg</div>
<div><br></div><div>Traceback (most recent call last):</div><div><br></div><div> File "<string>", line 16, in <module></div><div><br></div><div> File "/home/dylan/.virtualenvs/khmer-test/build/khmer/setup.py", line 103, in <module></div>
<div><br></div><div> "long_description": open("README.rst").read(),</div><div><br></div><div>IOError: [Errno 2] No such file or directory: 'README.rst'</div></div><div><br></div><div>Dylan Bodington</div>
<div>Tokyo Institute of Technology</div></div>