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Hi,<br>
<br>
I'm starting to use your tools (khmer) for paleometagenomics
analysis (25000 years old DNA samples)<br>
In the Handbook, for metagenome assembly, the step 2 consist in
trimming sequences at a min k-mer abundance with filter-abund.py (in
the handbook the script is named filter-below-abund , but I guess
it's the same)<br>
The counting hash table <input.kh> must be built before with
load-into-counting.py... but on the original fasta file or on the
.keep file resulting from the step 1 (normalize-bymedian.py) ?<br>
<br>
Thanks<br>
<br>
Cheers From Bordeaux<br>
<br>
Alexis Groppi<br>
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