[khmer] slice-reads-by-coverage.py on PE data question
Fields, Christopher J
cjfields at illinois.edu
Fri Jun 5 07:14:11 PDT 2015
I have used split-paired-reads.py for this purpose when normalizing PE reads, I assume it should work the same here.
chris
On Jun 5, 2015, at 8:38 AM, Diane Hatziioanou <dianehioanou at gmail.com<mailto:dianehioanou at gmail.com>> wrote:
Hello all again,
I have a question.
I want to use the slice-reads-by-coverage.py but I've got PE data which I would like to keep as PE data. Is slice-reads-by-coverage.py able to deal with interleaved PE data and keep it PE, can it manage it in another format or am I asking for too much and would have to use single ends and try pairing them back after its done?
Thanks,
Diane
--
Dr Diane Hatziioanou
Greek Mobile: (+30)6909403373
UK Mobile: (+44)7779516625
www.linkedin.com/in/dhatziioanou/<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.linkedin.com_in_dhatziioanou_&d=AwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=dRcvnkEofGJzLdh7UkycULWyPkXIh41x5bZwerAUmho&s=HkGDnjft354ZjCH76btBvDSlqJalDCBYdlxfZezC5A4&e=>
https://twitter.com/DianeHIoanou<https://urldefense.proofpoint.com/v2/url?u=https-3A__twitter.com_DianeHIoanou&d=AwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=fbHa8Njtvh9VmSnzJxiEUTW9NWDwMMwQAzhgZDO41GQ&m=dRcvnkEofGJzLdh7UkycULWyPkXIh41x5bZwerAUmho&s=IXFKb657NAEdn_sXAHqCdOLY8MG2FfADm3AWWqWIMAk&e=>
_______________________________________________
khmer mailing list
khmer at lists.idyll.org<mailto:khmer at lists.idyll.org>
http://lists.idyll.org/listinfo/khmer
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.idyll.org/pipermail/khmer/attachments/20150605/306446a7/attachment.htm>
More information about the khmer
mailing list