[khmer] Suggestion on check_space test

[Ramakrishnan Srinivasan]

I think this is a case of passing the output file path in scripts where -in
path can be different from -out path (such as in normalize-by-median).

--
Ram

On Thu, Sep 25, 2014 at 12:06 PM, C. Titus Brown <ctb at msu.edu> wrote:

> On Thu, Sep 25, 2014 at 10:58:46AM -0500, Adina Chuang Howe wrote:
> > Hi team,
> >
> > I was running diginorm today on two different disks (one for the
> > intermediate normalized files) and one on another disk (containing the
> raw
> > sequences) .  I think this will be fairly typical in the future.
> > Currently, a test (file.py check_space) will error out, given this setup.
> > I think it'd be nice to be able to bypass this check or at least make it
> > more robust (to checking the write-out disk only).
> >
> > Low priority, but notable, hopefully helpful.
>
> Agreed -- see
>
> https://github.com/ged-lab/khmer/issues/399
>
> --titus
> --
> C. Titus Brown, ctb at msu.edu
>
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