[khmer] 答复: Khmer troubleshooting

[Michael R. Crusoe]

On Mon, Mar 3, 2014 at 9:19 PM, Shu CHEN <szc0049 at tigermail.auburn.edu>wrote:

>  Thanks for your help. I'm following this protocol
>
> http://ged.msu.edu/angus/diginorm-2012/tutorial.html
>
You are welcome. This tutorial is no longer maintained. My apologies as I
thought I had added a notice.

You may find the updated installation instructions useful:
https://khmer.readthedocs.org/en/latest/install.html


> ------------------------------
> *发件人:* Michael R. Crusoe <mcrusoe at msu.edu>
> *发送时间:* 2014年3月3日 23:09
> *收件人:* Shu CHEN
> *抄送:* khmer at lists.idyll.org; Leigh Sheneman
> *主题:* Re: Khmer troubleshooting
>
>  Hello,
>
>  Which tutorial are you using?
>
>  If you are following the khmer-protocols then place to ask for help is
> https://github.com/ged-lab/khmer-protocols/issues?state=open
>
>
> On Mon, Mar 3, 2014 at 3:31 PM, Shu CHEN <szc0049 at tigermail.auburn.edu>wrote:
>
>>   Hi,
>>
>>
>>  I followed your tutorial of using Khmer in the amzon EC2. After I ran
>> the 'make test', it gave me a error feed back as:
>>
>> tests.test_scripts.test_normalize_by_median_version ... ERROR
>>
>> ======================================================================
>> ERROR: tests.test_scripts.test_normalize_by_median_version
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>>   File "/usr/lib/pymodules/python2.7/nose/case.py", line 187, in runTest
>>     self.test(*self.arg)
>>   File "/home/ubuntu/khmer/tests/test_scripts.py", line 392, in
>> test_normalize_by_median_version
>>     status, out, err = popenscript(script, args)
>>   File "/home/ubuntu/khmer/tests/test_scripts.py", line 135, in
>> popenscript
>>     raise Exception(status, out, err)
>> Exception: (1, '', 'Traceback (most recent call last):\n  File
>> "/home/ubuntu/khmer/scripts/normalize-by-median.py", line 19, in
>> <module>\n    import khmer\nImportError: No module named khmer\n')
>> -------------------- >> begin captured stdout << ---------------------
>> running: /home/ubuntu/khmer/scripts/normalize-by-median.py in: None
>> arguments ['--version']
>>
>> Can you help me fix this issue?
>>
>>
>>   Shu Chen
>>
>> Ph.D. Student
>>
>> Department of Agronomy and Soils
>>
>> RM 165, Funchess Hall
>>
>
>
>
>  --
> Michael R. Crusoe:  Programmer & Bioinformatician   mcrusoe at msu.edu
>  @ the Genomics, Evolution, and Development lab; Michigan State U
> http://ged.msu.edu/ http://orcid.org/0000-0002-2961-9670 @biocrusoe<http://twitter.com/biocrusoe>
>



-- 
Michael R. Crusoe:  Programmer & Bioinformatician   mcrusoe at msu.edu
 @ the Genomics, Evolution, and Development lab; Michigan State U
http://ged.msu.edu/ http://orcid.org/0000-0002-2961-9670
@biocrusoe<http://twitter.com/biocrusoe>
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