[khmer] Khmer troubleshooting

[Shu CHEN]

Hi,


I followed your tutorial of using Khmer in the amzon EC2. After I ran the 'make test', it gave me a error feed back as:

tests.test_scripts.test_normalize_by_median_version ... ERROR

======================================================================
ERROR: tests.test_scripts.test_normalize_by_median_version
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/pymodules/python2.7/nose/case.py", line 187, in runTest
    self.test(*self.arg)
  File "/home/ubuntu/khmer/tests/test_scripts.py", line 392, in test_normalize_by_median_version
    status, out, err = popenscript(script, args)
  File "/home/ubuntu/khmer/tests/test_scripts.py", line 135, in popenscript
    raise Exception(status, out, err)
Exception: (1, '', 'Traceback (most recent call last):\n  File "/home/ubuntu/khmer/scripts/normalize-by-median.py", line 19, in <module>\n    import khmer\nImportError: No module named khmer\n')
-------------------- >> begin captured stdout << ---------------------
running: /home/ubuntu/khmer/scripts/normalize-by-median.py in: None
arguments ['--version']

Can you help me fix this issue?


Shu Chen

Ph.D. Student

Department of Agronomy and Soils

RM 165, Funchess Hall
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