[khmer] normalize-by-median.py - IOError: [Errno 30] Read-only file system:

[Efraim Rodrigues]

Greetings Ramakrishnan,

Thank you for quick reply.

This is the output for 'uname -a', 2.6.32-431.11.2.el6.x86_64 #1 SMP Tue
Mar 25 11:15:18 CDT 2014 x86_64 x86_64 x86_64 GNU/Linux

My output for 'mount' is "type nfs
(rw,nfsvers=3,rsize=32678,wsize=32678,noacl,sloppy)".

Thank you!


On Wed, Jul 2, 2014 at 11:28 AM, Ramakrishnan Srinivasan <ramrs at nyu.edu>
wrote:

> Hello Efraim,
>
> Thank you for using khmer. This looks like an error owing to incompatible
> file system formats.
>
> This might happen if we tried writing to an incompatible file system (say,
> NTFS) from certain versions of Linux. Any information on the exact Linux
> distro+version you're running and the filesystem format of the partition
> you are writing to would help.
>
> Could you maybe give us the output of the following commands:
> `uname -a`
> `mount`
>
> Thank you!
>
>
>
> --
> Ram
>
>
> On Wed, Jul 2, 2014 at 12:13 PM, Efraim Rodrigues <efraimnaassom at gmail.com
> > wrote:
>
>> Greetings,
>>
>> Before running normalize-by-median.py, I ran interleave-reads.py which
>> generated a 'se' file. Then, it looks like the normalize-by-median.py
>> requires special rights to work on this output file from
>> interleave-reads.py and even though I have already set all possible rights,
>> it is still returning the error  IOError: [Errno 30] Read-only file system:
>>
>> I looked it up on github issues and khmer.readthedocs.org/ but I could
>> not find anything related to it. Thus, has anyone faced this problem before?
>>
>> Regards,
>> Efraim Rodrigues.
>>
>> _______________________________________________
>> khmer mailing list
>> khmer at lists.idyll.org
>> http://lists.idyll.org/listinfo/khmer
>>
>>
>
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