[khmer] abundance-dist for paired end data

Nacho Caballero nachocab at gmail.com
Wed Oct 16 13:54:53 PDT 2013

I’m following the STAMPS
I created the bloom filter for my two paired end files

python load-into-counting.py -x 1e8 -k 20 sample.kh sample_1.fastq

Now I’m trying to generate the distribution, but there is no -p option, how
should I do it?

python abundance-dist.py sample.kh ??.fastq sample.hist
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.idyll.org/pipermail/khmer/attachments/20131016/e046f78a/attachment-0002.htm>

More information about the khmer mailing list