[khmer] abundance-dist for paired end data

Nacho Caballero nachocab at gmail.com
Wed Oct 16 13:54:53 PDT 2013


I’m following the STAMPS
tutorial<http://ged.msu.edu/angus/2013-hmp-assembly-webinar/exploring-stamps-data.html>and
I created the bloom filter for my two paired end files

python load-into-counting.py -x 1e8 -k 20 sample.kh sample_1.fastq
sample_2.fastq

Now I’m trying to generate the distribution, but there is no -p option, how
should I do it?

python abundance-dist.py sample.kh ??.fastq sample.hist
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