[khmer] khmer-0.7 install issues

[Michael R. Crusoe]

Thank you Dylan for your report.

I can confirm the error. A revised release of khmer will be released
shortly to fix these error. There will be no need to install versioneer in
the fixed version.


On Mon, Nov 18, 2013 at 9:24 PM, Dylan Bodington <bodington at gmail.com>wrote:

> Hi,
>
> I encountered two issues with the khmer-0.7 pip installation.
>
> $cat /proc/version
> Linux version 2.6.32-220.23.1.el6.x86_64 (
> mockbuild at c6b5.bsys.dev.centos.org) (gcc version 4.4.6 20110731 (Red Hat
> 4.4.6-3) (GCC)
>
> $python --version
> Python 2.7.5
>
>
>
> 1. The versioneer dependency required a manual installation of versioneer,
> which is simple enough but involved manually git-cloning
> https://github.com/warner/python-versioneer and moving versioneer.py into
> the python path. I'm not experienced enough with python to suggest how to
> streamline this, though.
>
>
>
> 2. Installation error
>
> Downloading/unpacking khmer
>   Running setup.py egg_info for package khmer
>     Downloading
> http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz
>     Extracting in /tmp/tmpgad1YR
>     Now working in /tmp/tmpgad1YR/distribute-0.6.14
>     Building a Distribute egg in
> /home/dylan/.virtualenvs/khmer-test/build/khmer
>
> /home/dylan/.virtualenvs/khmer-test/build/khmer/distribute-0.6.14-py2.7.egg
>     Traceback (most recent call last):
>       File "<string>", line 16, in <module>
>       File "/home/dylan/.virtualenvs/khmer-test/build/khmer/setup.py",
> line 103, in <module>
>         "long_description": open("README.rst").read(),
>     IOError: [Errno 2] No such file or directory: 'README.rst'
>     Complete output from command python setup.py egg_info:
>     Downloading
> http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz
>
> Extracting in /tmp/tmpgad1YR
>
> Now working in /tmp/tmpgad1YR/distribute-0.6.14
>
> Building a Distribute egg in
> /home/dylan/.virtualenvs/khmer-test/build/khmer
>
> /home/dylan/.virtualenvs/khmer-test/build/khmer/distribute-0.6.14-py2.7.egg
>
> Traceback (most recent call last):
>
>   File "<string>", line 16, in <module>
>
>   File "/home/dylan/.virtualenvs/khmer-test/build/khmer/setup.py", line
> 103, in <module>
>
>     "long_description": open("README.rst").read(),
>
> IOError: [Errno 2] No such file or directory: 'README.rst'
>
> Dylan Bodington
> Tokyo Institute of Technology
>
> _______________________________________________
> khmer mailing list
> khmer at lists.idyll.org
> http://lists.idyll.org/listinfo/khmer
>
>


-- 
Michael R. Crusoe: Software Engineer and Bioinformatician  mcrusoe at msu.edu
 @ the Genomics, Evolution, and Development lab; Michigan State University
http://ged.msu.edu/     http://orcid.org/0000-0002-2961-9670
@biocrusoe<http://twitter.com/biocrusoe>
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