[khmer] khmer-0.7 install issues

[Dylan Bodington]

Hi,

I encountered two issues with the khmer-0.7 pip installation.

$cat /proc/version
Linux version 2.6.32-220.23.1.el6.x86_64 (mockbuild at c6b5.bsys.dev.centos.org)
(gcc version 4.4.6 20110731 (Red Hat 4.4.6-3) (GCC)

$python --version
Python 2.7.5



1. The versioneer dependency required a manual installation of versioneer,
which is simple enough but involved manually git-cloning
https://github.com/warner/python-versioneer and moving versioneer.py into
the python path. I'm not experienced enough with python to suggest how to
streamline this, though.



2. Installation error

Downloading/unpacking khmer
  Running setup.py egg_info for package khmer
    Downloading
http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz
    Extracting in /tmp/tmpgad1YR
    Now working in /tmp/tmpgad1YR/distribute-0.6.14
    Building a Distribute egg in
/home/dylan/.virtualenvs/khmer-test/build/khmer

/home/dylan/.virtualenvs/khmer-test/build/khmer/distribute-0.6.14-py2.7.egg
    Traceback (most recent call last):
      File "<string>", line 16, in <module>
      File "/home/dylan/.virtualenvs/khmer-test/build/khmer/setup.py", line
103, in <module>
        "long_description": open("README.rst").read(),
    IOError: [Errno 2] No such file or directory: 'README.rst'
    Complete output from command python setup.py egg_info:
    Downloading
http://pypi.python.org/packages/source/d/distribute/distribute-0.6.14.tar.gz

Extracting in /tmp/tmpgad1YR

Now working in /tmp/tmpgad1YR/distribute-0.6.14

Building a Distribute egg in /home/dylan/.virtualenvs/khmer-test/build/khmer

/home/dylan/.virtualenvs/khmer-test/build/khmer/distribute-0.6.14-py2.7.egg

Traceback (most recent call last):

  File "<string>", line 16, in <module>

  File "/home/dylan/.virtualenvs/khmer-test/build/khmer/setup.py", line
103, in <module>

    "long_description": open("README.rst").read(),

IOError: [Errno 2] No such file or directory: 'README.rst'

Dylan Bodington
Tokyo Institute of Technology
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